{ "_id": "6a10b2b0acfb0bcc41cc47df", "Package": "bioRad", "Title": "Biological Analysis and Visualization of Weather Radar Data", "Version": "0.11.0.9000", "Description": "Extract, visualize and summarize aerial movements of birds\nand insects from weather radar data. See Dokter, A. M. et al.\n(2018) \"bioRad: biological analysis and visualization of\nweather radar data\" for a software\npaper describing package and methodologies.", "Authors@R": "c(\nperson(\"Adriaan M.\", \"Dokter\", role = c(\"aut\", \"cre\"), email = \"biorad@cornell.edu\", comment = c(ORCID = \"0000-0001-6573-066X\")),\nperson(\"Peter\", \"Desmet\", role = \"aut\", email = \"peter.desmet@inbo.be\", comment = c(ORCID = \"0000-0002-8442-8025\")),\nperson(\"Bart\", \"Kranstauber\", role = \"aut\", email = \"b.kranstauber@uva.nl\", comment = c(ORCID = \"0000-0001-8303-780X\")),\nperson(\"Cecilia\", \"Nilsson\", role = \"aut\", email = \"cecilia.nilsson709@gmail.com\", comment = c(ORCID = \"0000-0001-8957-4411\")),\nperson(\"Alexander\", \"Tedeschi\", role = \"aut\", email = \"alexander.tedeschi@cornell.edu\", comment = c(ORCID = \"0000-0003-0772-6931\")),\nperson(\"Stijn\", \"Van Hoey\", role = \"aut\", email = \"stijnvanhoey@gmail.com\", comment = c(ORCID = \"0000-0001-6413-3185\")),\nperson(\"Bart\", \"Hoekstra\", role = \"ctb\", email = \"b.d.hoekstra@uva.nl\", comment = c(ORCID = \"0000-0002-7085-3805\")),\nperson(\"Pieter\", \"Huybrechts\", role = \"ctb\", email = \"pieter.huybrechts@inbo.be\", comment = c(ORCID = \"0000-0002-6658-6062\")),\nperson(\"Hidde\", \"Leijnse\", role = \"ctb\", email = \"hidde.leijnse@knmi.nl\", comment = c(ORCID = \"0000-0001-7835-4480\")),\nperson(\"Nicolas\", \"Noé\", role = \"ctb\", email = \"nicolas@niconoe.eu\", comment = c(ORCID = \"0000-0002-9503-4750\")),\nperson(\"Raphaël\", \"Nussbaumer\", role = \"ctb\", email = \"rafnuss@gmail.com\", comment = c(ORCID = \"0000-0002-8185-1020\")),\nperson(\"Jurriaan\", \"Spaaks\", role = \"ctb\", email = \"j.spaaks@esciencecenter.nl\"),\nperson(\"Lourens\", \"Veen\", role = \"ctb\", email = \"l.veen@esciencecenter.nl\"),\nperson(\"Liesbeth\", \"Verlinden\", role = \"ctb\", email = \"l.verlinden@uva.nl\", comment = c(ORCID = \"0000-0003-1744-9325\"))\n)", "License": "MIT + file LICENSE", "URL": "https://github.com/adokter/bioRad/,\nhttps://adriaandokter.com/bioRad/", "BugReports": "https://github.com/adokter/bioRad/issues", "biocViews": "", "LazyData": "true", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev libx11-dev", "Repository": "https://adokter.r-universe.dev", "Date/Publication": "2026-05-22 16:50:37 UTC", "RemoteUrl": "https://github.com/adokter/biorad", "RemoteRef": "HEAD", "RemoteSha": "68838b3f49bd97753c2e01d583baaafd22e844da", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 19:09:18 UTC", "User": "root" }, "Author": "Adriaan M. Dokter [aut, cre] (ORCID:\n),\nPeter Desmet [aut] (ORCID: ),\nBart Kranstauber [aut] (ORCID: ),\nCecilia Nilsson [aut] (ORCID: ),\nAlexander Tedeschi [aut] (ORCID:\n),\nStijn Van Hoey [aut] (ORCID: ),\nBart Hoekstra [ctb] (ORCID: ),\nPieter Huybrechts [ctb] (ORCID:\n),\nHidde Leijnse [ctb] (ORCID: ),\nNicolas Noé [ctb] (ORCID: ),\nRaphaël Nussbaumer [ctb] (ORCID:\n),\nJurriaan Spaaks [ctb],\nLourens Veen [ctb],\nLiesbeth Verlinden [ctb] (ORCID:\n)", "Maintainer": "Adriaan M. 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"write_pvolfile" ], "_datasets": [ { "name": "example_scan", "title": "Scan ('scan') example", "object": "example_scan", "class": [ "scan" ], "fields": [], "table": false, "tojson": false }, { "name": "example_vp", "title": "Vertical profile ('vp') example", "object": "example_vp", "class": [ "vp" ], "fields": [], "table": false, "tojson": false }, { "name": "example_vpts", "title": "Time series of vertical profiles ('vpts') example", "object": "example_vpts", "class": [ "vpts" ], "fields": [], "table": false, "tojson": false }, { "name": "vpts_schema", "title": "ENRAM-defined VPTS schema", "object": "vpts_schema", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "sub-.ppi", "title": "Subset a plan position indicator ('ppi')", "topics": [ "[.ppi" ] }, { "page": "apply_mistnet", "title": "Apply MistNet segmentation to a polar volume", "topics": [ "apply_mistnet" ] }, { "page": "as.data.frame.vp", "title": "Convert a vertical profile ('vp') or time series of vertical profiles ('vpts') to a data frame", "topics": [ "as.data.frame.vp", "as.data.frame.vpts" ] }, { "page": "as.vp", "title": "Convert a dataframe into a vp object", "topics": [ "as.vp" ] }, { "page": "as.vpts", "title": "Convert a dataframe into a vpts object", "topics": [ "as.vpts" ] }, { "page": "attribute_table", "title": "Extract a volume coverage pattern table with all attributes", "topics": [ "attribute_table" ] }, { "page": "beam_distance", "title": "Calculate radar beam distance", "concept": [ "beam_functions" ], "topics": [ "beam_distance" ] }, { "page": "beam_height", "title": "Calculate radar beam height", "concept": [ "beam_functions" ], "topics": [ "beam_height" ] }, { "page": "beam_profile", "title": "Calculate vertical radiation profile", "concept": [ "beam_functions" ], "topics": [ "beam_profile" ] }, { "page": "beam_profile_overlap", "title": "Calculate overlap between a vertical profile ('vp') and the vertical radiation profile emitted by the radar", "concept": [ "beam_functions" ], "topics": [ "beam_profile_overlap" ] }, { "page": "beam_range", "title": "Calculate radar beam range", "concept": [ "beam_functions" ], "topics": [ "beam_range" ] }, { "page": "beam_width", "title": "Calculate radar beam width", "concept": [ "beam_functions" ], "topics": [ "beam_width" ] }, { "page": "bind_into_vpts", "title": "Bind vertical profiles ('vp') into time series ('vpts')", "topics": [ "bind_into_vpts", "bind_into_vpts.list", "bind_into_vpts.vp", "bind_into_vpts.vpts" ] }, { "page": "c.vp", "title": "Concatenate vertical profiles ('vp') into a list of vertical profiles", "topics": [ "c.vp" ] }, { "page": "calculate_param", "title": "Calculate a new scan parameter", "topics": [ "calculate_param", "calculate_param.ppi", "calculate_param.pvol", "calculate_param.scan" ] }, { "page": "calculate_vp", "title": "Calculate a vertical profile ('vp') from a polar volume ('pvol') file", "topics": [ "calculate_vp" ] }, { "page": "check_night", "title": "Check if it is night at a given time and place", "topics": [ "check_night", "check_night.default", "check_night.list", "check_night.pvol", "check_night.vp", "check_night.vpi", "check_night.vpts" ] }, { "page": "clean_mixture", "title": "Partition mixtures of animals using assumptions on airspeeds.", "topics": [ "clean_mixture", "clean_mixture.default", "clean_mixture.vp", "clean_mixture.vpts" ] }, { "page": "composite_ppi", "title": "Create a composite of multiple plan position indicators ('ppi')", "topics": [ "composite_ppi" ] }, { "page": "convert_legacy", "title": "Convert legacy bioRad objects", "topics": [ "convert_legacy", "convert_legacy.vp", "convert_legacy.vpts" ] }, { "page": "dbz_to_eta", "title": "Convert reflectivity factor (dBZ) to reflectivity (eta)", "topics": [ "dbz_to_eta" ] }, { "page": "download_pvolfiles", "title": "Download polar volume ('pvol') files from the NEXRAD archive", "topics": [ "download_pvolfiles" ] }, { "page": "download_vpfiles", "title": "Download vertical profile ('vp') files from the ENRAM data repository", "topics": [ "download_vpfiles" ] }, { "page": "doy_noy", "title": "Look up day of year (doy) or night of year (noy)", "topics": [ "doy", "doy.default", "doy.pvol", "doy.vp", "doy.vpi", "doy.vpts", "doy_noy", "noy", "noy.default", "noy.pvol", "noy.vp", "noy.vpi", "noy.vpts" ] }, { "page": "eta_to_dbz", "title": "Convert reflectivity (eta) to reflectivity factor (dBZ)", "topics": [ "eta_to_dbz" ] }, { "page": "example_scan", "title": "Scan ('scan') example", "topics": [ "example_scan" ] }, { "page": "example_vp", "title": "Vertical profile ('vp') example", "topics": [ "example_vp" ] }, { "page": "example_vpts", "title": "Time series of vertical profiles ('vpts') example", "topics": [ "example_vpts" ] }, { "page": "filter_precip", "title": "Posthoc precipitation filter", "topics": [ "filter_precip" ] }, { "page": "filter_vpts", "title": "Filter a time series of vertical profiles ('vpts').", "topics": [ "filter_vpts" ] }, { "page": "get_elevation_angles", "title": "Get elevation angles of a polar volume ('pvol'), scan ('scan') or parameter ('param')", "topics": [ "get_elevation_angles", "get_elevation_angles.param", "get_elevation_angles.pvol", "get_elevation_angles.scan" ] }, { "page": "get_iris_raw_task", "title": "Check the 'task' type of an IRIS RAW file", "topics": [ "get_iris_raw_task" ] }, { "page": "get_odim_object_type", "title": "Check the 'data' type of an ODIM HDF5 file", "topics": [ "get_odim_object_type" ] }, { "page": "get_param", "title": "Get a parameter ('param') from a scan ('scan')", "topics": [ "get_param" ] }, { "page": "get_quantity", "title": "Get a quantity from a vertical profile ('vp') or time series of vertical profiles ('vpts')", "topics": [ "get_quantity", "get_quantity.list", "get_quantity.vp", "get_quantity.vpts" ] }, { "page": "get_scan", "title": "Get a scan ('scan') from a polar volume ('pvol')", "topics": [ "get_scan" ] }, { "page": "integrate_profile", "title": "Vertically integrate profiles ('vp' or 'vpts') into an integrated profile ('vpi')", "topics": [ "integrate_profile", "integrate_profile.list", "integrate_profile.vp", "integrate_profile.vpts" ] }, { "page": "integrate_to_ppi", "title": "Calculate a plan position indicator ('ppi') of vertically integrated density adjusted for range effects", "topics": [ "integrate_to_ppi" ] }, { "page": "is.pvolfile", "title": "Check if a file is a polar volume ('pvol')", "topics": [ "is.pvolfile" ] }, { "page": "is.vpfile", "title": "Check if a file is a vertical profile ('vp')", "topics": [ "is.vpfile" ] }, { "page": "list_vpts_aloft", "title": "List aloft urls for time series of vertical profiles ('vpts') of radar stations", "topics": [ "list_vpts_aloft" ] }, { "page": "map", "title": "Map a plan position indicator ('ppi') on a map", "topics": [ "map", "map.ppi" ] }, { "page": "Ops", "title": "Mathematical and arithmetic operations on param's, scan's and pvol's", "topics": [ "Math.pvol", "Math.scan", "Ops.param", "Ops.pvol", "Ops.scan" ] }, { "page": "nexrad_to_odim", "title": "Convert a NEXRAD polar volume file to an ODIM polar volume file", "topics": [ "nexrad_to_odim" ] }, { "page": "nyquist_velocity", "title": "Calculate Nyquist velocity for a given pulse repetition frequency (PRF)", "topics": [ "nyquist_velocity" ] }, { "page": "plot.ppi", "title": "Plot a plan position indicator ('ppi')", "topics": [ "plot.ppi" ] }, { "page": "plot.scan", "title": "Plot a scan ('scan') in polar coordinates", "topics": [ "plot.scan" ] }, { "page": "plot.vp", "title": "Plot a vertical profile ('vp')", "topics": [ "plot.vp" ] }, { "page": "plot.vpi", "title": "Plot an integrated profile ('vpi')", "topics": [ "plot.vpi" ] }, { "page": "plot.vpts", "title": "Plot a time series of vertical profiles ('vpts')", "topics": [ "plot.vpts" ] }, { "page": "project_as_ppi", "title": "Project a scan ('scan') or parameter ('param') to a plan position indicator ('ppi')", "topics": [ "project_as_ppi", "project_as_ppi.param", "project_as_ppi.scan" ] }, { "page": "rcs", "title": "Get radar cross section", "topics": [ "rcs", "rcs.list", "rcs.vp", "rcs.vpi", "rcs.vpts" ] }, { "page": "rcs-set", "title": "Set radar cross section", "topics": [ "rcs<-", "rcs<-.list", "rcs<-.vp", "rcs<-.vpi", "rcs<-.vpts" ] }, { "page": "read_cajun", "title": "Read a vertical profile ('vp') from UMASS Cajun text file", "topics": [ "read_cajun" ] }, { "page": "read_pvolfile", "title": "Read a polar volume ('pvol') from file", "topics": [ "read_pvolfile" ] }, { "page": "read_vpfiles", "title": "Read a vertical profile ('vp') or a list of vertical profiles ('vp') from files", "topics": [ "read_vpfiles" ] }, { "page": "read_vpts", "title": "Read time series of vertical profiles ('vpts') from file(s)", "concept": [ "read functions" ], "topics": [ "read_vpts" ] }, { "page": "regularize_vpts", "title": "Regularize a time series of vertical profiles ('vpts') on a regular time grid", "topics": [ "regularize_vpts" ] }, { "page": "scan_to_raster", "title": "convert a polar scan into a raster", "topics": [ "scan_to_raster" ] }, { "page": "scan_to_spatial", "title": "convert a polar scan into a spatial object.", "topics": [ "scan_to_spatial" ] }, { "page": "sd_vvp_threshold", "title": "Get threshold of the radial velocity standard deviation", "topics": [ "sd_vvp_threshold", "sd_vvp_threshold.list", "sd_vvp_threshold.vp", "sd_vvp_threshold.vpts" ] }, { "page": "sd_vvp_threshold-set", "title": "Set threshold of the radial velocity standard deviation", "topics": [ "sd_vvp_threshold<-", "sd_vvp_threshold<-.list", "sd_vvp_threshold<-.vp", "sd_vvp_threshold<-.vpts" ] }, { "page": "select_vpfiles", "title": "Select vertical profile ('vp') files from computer", "topics": [ "select_vpfiles" ] }, { "page": "summary.param", "title": "Inspect a parameter ('param')", "topics": [ "is.param", "summary.param" ] }, { "page": "summary.ppi", "title": "Inspect a plan position indicator ('ppi')", 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